Hosein Fooladi

Machine Learning Researcher

Publications

  • Evaluating Machine Learning Models for Molecular Property Prediction: Performance and Robustness on Out-of-Distribution Data

    Journal of Chemical Information and Modeling

    Paper Code
    BibTeX 
    @article{fooladi2025evaluating,
  title={Evaluating Machine Learning Models for Molecular Property Prediction: Performance and Robustness on Out-of-Distribution Data},
  author={Fooladi, Hosein and Vu, Thi Ngoc Lan and Mathea, Miriam and Kirchmair, Johannes},
  journal={Journal of Chemical Information and Modeling},
  volume={65},
  number={19},
  pages={9871--9891},
  year={2025},
  publisher={ACS Publications}
}

  • Integrating Machine Learning-Based Pose Sampling with Established Scoring Functions for Virtual Screening

    Journal of Chemical Information and Modeling

    Paper Code
    BibTeX 
    @article{vu2025integrating,
  title={Integrating Machine Learning-Based Pose Sampling with Established Scoring Functions for Virtual Screening},
  author={Vu, Thi Ngoc Lan and Fooladi, Hosein and Kirchmair, Johannes},
  journal={Journal of Chemical Information and Modeling},
  volume={65},
  number={10},
  pages={4833--4843},
  year={2025},
  publisher={ACS Publications}
}

  • Quantifying the hardness of bioactivity prediction tasks for transfer learning

    Journal of Chemical Information and Modeling

    Paper Code
    BibTeX 
    @article{fooladi2024quantifying,
  title={Quantifying the hardness of bioactivity prediction tasks for transfer learning},
  author={Fooladi, Hosein and Hirte, Steffen and Kirchmair, Johannes},
  journal={Journal of Chemical Information and Modeling},
  volume={64},
  number={10},
  pages={4031-4046},
  year={2024},
  publisher={ACS Publications}
}

  • Bayesian optimization for ternary complex prediction (BOTCP)

    Artificial Intelligence in the Life Sciences

    Paper
    BibTeX 
    @article{rao2023bayesian,
  title={Bayesian optimization for ternary complex prediction (BOTCP)},
  author={Rao, Arjun and Tunjic, Tin M and Brunsteiner, Michael and M{\"u}ller, Michael and Fooladi, Hosein and Gasbarri, Chiara and Weber, Noah},
  journal={Artificial Intelligence in the Life Sciences},
  volume={3},
  pages={100072},
  year={2023},
  publisher={Elsevier}
}

  • Recognizing Arrow Of Time In The Short Stories

    ACL

    Paper Code
    BibTeX 
    @article{hosseini2019recognizing,
  title={Recognizing Arrow Of Time In The Short Stories},
  author={Hosseini, Fahimeh and Fooladi, Hosein and Samsami, Mohammad Reza},
  journal={arXiv preprint arXiv:1903.10548},
  year={2019}
}

  • Enhanced Waddington Landscape Model with Cell-Cell Communication Can Explain Molecular Mechanisms of Self-Organization

    Bioinformatics

    Paper Code
    BibTeX 
    @article{fooladi2019enhanced,
  title={Enhanced Waddington landscape model with cell--cell communication can explain molecular mechanisms of self-organization},
  author={Fooladi, Hosein and Moradi, Parsa and Sharifi-Zarchi, Ali and Hosein Khalaj, Babak},
  journal={Bioinformatics},
  volume={35},
  number={20},
  pages={4081--4088},
  year={2019},
  publisher={Oxford University Press}
}

  • Optimum Design, Manufacturing and Experiment of a Passive Walking Biped: Effects of Structural Parameters on Efficiency, Stability and Robustness on Uneven Trains

    Applied Mechanics and Materials

    Paper
    BibTeX 
    @article{sadati2013optimum,
  title={Optimum Design, Manufacturing and Experiment of a Passive Walking Biped: Effects of Structural Parameters on Efficiency, Stability and Robustness on Uneven Trains},
  author={Sadati, SM Hadi and Borgheinejad, M and Fooladi, H and Naraghi, M and Ohadi, AR},
  journal={Applied Mechanics and Materials},
  volume={307},
  pages={107--111},
  year={2013},
  publisher={Trans Tech Publ}
}