CV
Download PDF version of my CV from here.
Education
- Ph.D. Student, pharmaceutical sciences (Cheminformatics), University of Vienna, Vienna, Austria, Present
- M.Sc., Electrical Engineering (Biomedical Engineering), Sharif University of Technology, Tehran, Iran, 2017
- B.Sc., Mechanical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran, Iran, 2014
Work experience
- Feb 2021 - Feb 2022: Chief Data Scientist (CDS)
- Celeris Therapeutics, Graz, Austria
- Duties included: Machine learning for targeted protein degradation
- Machine learning to identify targets that are susceptible to degradation.
- Machine learning for ternary complex prediction (complex formed by two proteins and degrader).
- Apr 2019 - Dec 2020: Senior Data Scientist - Chemoinformatics / Machine learning expert
- AI VIVO, Cambridge, UK
- Duties included: Machine learning for drug repositioning, drug combination, and de novo drug design.
- Predicting the effect of different perturbations (mostly small molecules) on different cell lines.
- Developing machine learning tools for predicting synergy of drug combinations.
- May 2018 - Dec 2019: Chief Scientific Officer (CSO)
- Shenakht Pajouh, Tehran, Iran
- Duties included: Reconciling Psychological knowledge with machine learning in order to build automated mental health assistant.
- Feb 2017 - Jan 2018: Machine learning reasearcher
- Cambridge system biology centre
- Duties included: Deep learning in drug discovery
- Jan 2017 - Aug 2017: Bioinformatics researcher
- Royan Institute, Tehran, Iran
- Duties included: Reconstructing context-specific metabolic networks from gene expression data.
- Spring 2017: Teaching assistant
- Sharif University of Technology, Tehran, Iran
- Duties included: Advanced bioinformatics course, system biology course
Skills
- Machine learning (Bayesian inference, Causal learning)
- Bioinformatics
- Programming
Publications
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Hadi, Sadati et al. (2013). "Optimum Design, Manufacturing and Experiment of a Passive Walking Biped: Effects of Structural Parameters on Efficiency, Stability and Robustness on Uneven Trains." Applied Mechanics and Materials.
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Hosein, Fooladi. (2019). "Enhanced Waddington Landscape Model with Cell-Cell Communication Can Explain Molecular Mechanisms of Self-Organization." Bioinformatics 1. 1(3).
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Hosseini, Fahimeh, Hosein Fooladi, and Mohammad Reza Samsami. "Recognizing Arrow Of Time In The Short Stories." arXiv preprint arXiv:1903.10548 (2019).
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Rao, Arjun, et al. "Bayesian optimization for ternary complex prediction (BOTCP)." Artificial Intelligence in the Life Sciences 3 (2023): 100072.
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Mekni, Nedra, et al. "Encoding Protein-Ligand Interactions: Binding Affinity Prediction with Multigraph-based Modeling and Graph Convolutional Network" ChemRxiv (2023)
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Fooladi, Hosein, et al. "Quantifying the hardness of bioactivity prediction tasks for transfer learning" Journal of Chemical Information and Modeling (2024)
Reviewer
Talks
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October 01, 2019
Talk at Sharif University of Technology, Department of Computer Engineering, Tehran
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November 10, 2019
Talk at Sharif University of Technology, Department of Computer Engineering, Tehran
Teaching
Service and leadership
- Active Open Source Developer
